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5.13l - October 8, 2020

5.13n (14) - beta - September 30, 2022

• Allow co-localization study for XYShape/ShapePlot...
• Fix an issue in Contour Roi (triggered in nucleoid detection)
• Fix an issue in ShapePlot (Only the categories of the last group were taken into account)
• Add a new version of CombineStack
• Fix a few issues in Charts
• Fix the offset issue for overlay
• Upgrade XYShape/ShapePlot to display Curved Shaped bacteria
• Fix a few issues in Chain detection
• Add SuperPlots & ShapeProportionPlot
• Fix Criteria Error
• Add a way to edit Features in the Editing Interface
• Improve SuperPlots
• Fix a few issues in Tree display (Profiles)
• Add a way to rescue old version of Results
• Add a way to export cell boundaries as a binary mask or a label map
• Add a way to export Shape as Relative Polygon coordinates
• Add the DeepIJThresholding option for segmentation
• Add a way to generate demograph with more than one profile
• Fix an issue with DeepImagej
• Upgrade ResultJ in order to accept special characters in criteria
• Fix an issue in the experiment editor : features a now updated
• Fix an issue in the user defined Mask management

How to Install MicrobeJ

• Locate the ImageJ or Fiji Folder:
  • On Windows...
    The ImageJ or Fiji Folder is most likely located in "C:\Program File\" or in "C:\Users\[your name]\". Note it is strongly recommend that you store your Fiji.app directory somewhere in your user space (e.g., "C:\Users\[your name]\Fiji.app") rather than in "C:\Program Files".
  • On MacOSX...
    The ImageJ or Fiji Application is most likely located in "\Applications\". Right-click (or control-click) the Fiji.app, select "Show package contents" and locate the "plugins" folder.
• Download MicrobeJ_.jar into the "ImageJ\plugins\" or "Fiji.app\plugins\" folder.
• For ImageJ, you must also download and drop bioformatspackage.jar into the "ImageJ\plugins\" folder.
• Restart ImageJ or Fiji.
• Select 'MicrobeJ' in the Plugins menu.

Older Versions of MicrobeJ

• 5.13 a ₁ | b ₁ | c ₁ | d ₁ | e ₁ | f ₁ | h ₁ | i ₁ | j ₁ | k _{1 , 2} | l _{1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18 , 19 , 20 , 21 , 22} | m _{1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14 , 15 , 16 , 17 , 18} | n _{1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 , 9 , 10 , 11 , 12 , 13 , 14}

• 5.12 a | b | c | d

• 5.11 a | b | c | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | w | x | z

• 5.10 m | l | o | p | r | s | t | u | v | w | x | y | z

Sources

• The source of MicrobeJ
• The source of ResultJ