5.13p - April 3, 2024
- Allow co-localization study for XYShape/ShapePlot...
- Fix an issue in Contour Roi (triggered in nucleoid detection)
- Fix an issue in ShapePlot (Only the categories of the last group were taken into account)
- Add a new version of CombineStack
- Fix a few issues in Charts
- Fix the offset issue for overlay
- Upgrade XYShape/ShapePlot to display Curved Shaped bacteria
- Fix a few issues in Chain detection
- Add SuperPlots & ShapeProportionPlot
- Fix Criteria Error
- Add a way to edit Features in the Editing Interface
- Improve SuperPlots
- Fix a few issues in Tree display (Profiles)
- Add a way to rescue old version of Results
- Add a way to export cell boundaries as a binary mask or a label map
- Add a way to export Shape as Relative Polygon coordinates
- Add the DeepIJThresholding option for segmentation
- Add a way to generate demograph with more than one profile
- Fix an issue with DeepImagej
- Upgrade ResultJ in order to accept special characters in criteria
- Fix an issue in the experiment editor : features a now updated
- Fix an issue in the user defined Mask management
- Upgrade Fiber detection
- Implement the template detection ooption
- Make MJ compatible with the latest version of DeepImageJ 2.15
- Fix an issue in Criteria
- Fix an issue in the experiment editor : features were not updated correctly
- Add Event detection in TimeParticle
- Add a way to apply a filter (opening) on the mask used for the background measurement
- Add the distance on the boundary in PolarCoordinate
- Add a way to compute averaged local background
- Fix an issue about image resolution
- Fix an issue in contact detection
- Fix an issue in ContourShape
- Add a way to manually add feature using line drawer
- Fix an issue in ContourShape (2)
- Fix an issue in Geometry
- Fix an display issue during initialization
- Add MicrobeJ_m to call microbeJ using a macro
- Add a way to bin category values from the graph interface
- Add constriction ratio in shape descriptors
- Fix a few issues with subcellular representation (2/2)
- Add signal variation analysis
- Add plugin BackGround Correction
- Fix a few issues in Graph
5.13p (27) - beta - July 3, 2025
- Upgrade label mask utilization and add a wrapper to use omnipose as new segmentation method
- Allow Features tracking and analysis
- Fix an issue in ShapePlot
- Upgrade XYStatErrorRenderer
- Upgrade MSD
- Upgrade Omnipose & CombineStack
- Add CellPose as a new segmentation method
- Add a way to use RGB images as input Images
- Add ParticleJ a "simplified" version of MicrobeJ
- Upgrade Cellpose & omnipose interface in order to choose the channel ou RGB channel
- Add a way to generate the mask using omnipose & cellpose from the MJ interface
- Add a way to select if the manually drawn particle can fusion or not with existing particles
- Big upgrade of Association/RelativePosition in order to facilitate angle determination for Features (Warning : may cause a compatibility issue)
- Add a way to compute the correlation between a theoretical cytoplasmic signal and the signal of each channel
- Fix an issue in the particle trackin algorithm
- Add a way to specify user-trained models in cellpose
- Add a way to use RoiManger in Combine Stack
- Fix an issue in CombineStack
- Add translate Processor function
- Add a way to use absolute X and/or Y coordinates in subcellular representations
- Fix an serialization issue in ParentAssociation
- Add a way to set an offset in heatmap representations
- Add a way to blur output image in CombineStack
- Major upgrade of Charts & options management
- Add a way to import Roi from ome.tiff images
- Add a way to use mask in Feature detection
- Add a way to detect features inside features!
- Add a way to generate mask from the experiment editor
- Upgrade Conda interface (Omnipose/cellpose) management
- Add a way to easily train Cellpose
- Add a way to define the direction of the longitudinal axis in rounded cells based on the signal of a specified channel or mask
- Upgrade Conda interface and add a training interface